../../tmp/servers/virsirnadb/1798947396
Result for your query siRNA sequence
RED | =100 % Complementary sequence |
. | =Identical residue |
blue alphabets | =mismatch |
_ | =Gap |
Acc number | Strain name | Start | Alignment | End | % Identity |
Query | virsi2235 | 1 | aacctacctctccagctagga | 21 | |
AY278491.2 | SARS coronavirus HKU-39849, complete genome | 18279 | ..................... | 18299 | 100 |
AY278554.2 | SARS coronavirus CUHK-W1, complete genome | 18264 | ..................... | 18284 | 100 |
AY278741.1 | SARS coronavirus Urbani, complete genome | 18279 | ..................... | 18299 | 100 |
AY278488.2 | SARS coronavirus BJ01, complete genome | 18260 | ..................... | 18280 | 100 |
AY283794.1 | SARS coronavirus Sin2500, complete genome | 18263 | ..................... | 18283 | 100 |
AY283795.1 | SARS coronavirus Sin2677, complete genome | 18263 | ..................... | 18283 | 100 |
AY283797.1 | SARS coronavirus Sin2748, complete genome | 18263 | ..................... | 18283 | 100 |
AY291451.1 | SARS coronavirus TW1, complete genome | 18279 | ..................... | 18299 | 100 |
AY297028.1 | SARS coronavirus ZJ01, complete genome | 18270 | ..................... | 18290 | 100 |
AY278489.2 | SARS coronavirus GD01, complete genome | 18263 | ..................... | 18283 | 100 |
AY278487.3 | SARS coronavirus BJ02, complete genome | 18279 | ..................... | 18299 | 100 |
AY278490.3 | SARS coronavirus BJ03, complete genome | 18275 | ..................... | 18295 | 100 |
AY279354.2 | SARS coronavirus BJ04, complete genome | 18263 | ..................... | 18283 | 100 |
AY291315.1 | SARS coronavirus Frankfurt 1, complete genome | 18279 | ..................... | 18299 | 100 |
AY321118.1 | SARS coronavirus TWC, complete genome | 18279 | ..................... | 18299 | 100 |
AY338174.1 | SARS coronavirus Taiwan TC1, complete genome | 18210 | ..................... | 18230 | 100 |
AY338175.1 | SARS coronavirus Taiwan TC2, complete genome | 18210 | ..................... | 18230 | 100 |
AY345986.1 | SARS coronavirus CUHK-AG01, complete genome | 18264 | ..................... | 18284 | 100 |
AY345987.1 | SARS coronavirus CUHK-AG02, complete genome | 18264 | ..................... | 18284 | 100 |
AY345988.1 | SARS coronavirus CUHK-AG03, complete genome | 18264 | ..................... | 18284 | 100 |
AY323977.2 | SARS coronavirus HSR 1, complete genome | 18279 | ..................... | 18299 | 100 |
AY348314.1 | SARS coronavirus Taiwan TC3, complete genome | 18210 | ..................... | 18230 | 100 |
AP006557.1 | SARS coronavirus TWH genomic RNA, complete genome | 18279 | ..................... | 18299 | 100 |
AP006558.1 | SARS coronavirus TWJ genomic RNA, complete genome | 18279 | ..................... | 18299 | 100 |
AP006559.1 | SARS coronavirus TWK genomic RNA, complete genome | 18279 | ..................... | 18299 | 100 |
AP006560.1 | SARS coronavirus TWS genomic RNA, complete genome | 18279 | ..................... | 18299 | 100 |
AP006561.1 | SARS coronavirus TWY genomic RNA, complete genome | 18279 | ..................... | 18299 | 100 |
AY362698.1 | SARS coronavirus TWC2, complete genome | 18279 | ..................... | 18299 | 100 |
AY362699.1 | SARS coronavirus TWC3, complete genome | 18279 | ..................... | 18299 | 100 |
AY310120.1 | SARS coronavirus FRA, complete genome | 18279 | ..................... | 18299 | 100 |
AY304486.1 | SARS coronavirus SZ3, complete genome | 18264 | ..................... | 18284 | 100 |
AY304488.1 | SARS coronavirus SZ16, complete genome | 18264 | ..................... | 18284 | 100 |
AY304495.1 | SARS coronavirus GZ50, complete genome | 18264 | ..................... | 18284 | 100 |
AY283798.2 | SARS coronavirus Sin2774, complete genome | 18263 | ..................... | 18283 | 100 |
AY427439.1 | SARS coronavirus AS, complete genome | 18263 | ..................... | 18283 | 100 |
AY394977.1 | SARS coronavirus GZ-A, partial genome | 18228 | ..................... | 18248 | 100 |
AY394978.1 | SARS coronavirus GZ-B, complete genome | 18207 | ..................... | 18227 | 100 |
AY394979.1 | SARS coronavirus GZ-C, complete genome | 18227 | ..................... | 18247 | 100 |
AY394980.1 | SARS coronavirus GZ-D, partial genome | 18233 | ..................... | 18253 | 100 |
AY394981.1 | SARS coronavirus HGZ8L1-A, partial genome | 18228 | ..................... | 18248 | 100 |
AY394982.1 | SARS coronavirus HGZ8L1-B, partial genome | 18227 | ..................... | 18247 | 100 |
AY394983.1 | SARS coronavirus HSZ2-A, complete genome | 18227 | ..................... | 18247 | 100 |
AY394984.1 | SARS coronavirus HSZ-A, partial genome | 18232 | ..................... | 18252 | 100 |
AY394985.1 | SARS coronavirus HSZ-Bb, complete genome | 18029 | ..................... | 18049 | 100 |
AY394986.1 | SARS coronavirus HSZ-Cb, complete genome | 18228 | ..................... | 18248 | 100 |
AY394987.1 | SARS coronavirus HZS2-Fb, complete genome | 18237 | ..................... | 18257 | 100 |
AY394988.1 | SARS coronavirus JMD, partial genome | 18193 | ..................... | 18213 | 100 |
AY394989.1 | SARS coronavirus HZS2-D, complete genome | 18264 | ..................... | 18284 | 100 |
AY394990.1 | SARS coronavirus HZS2-E, complete genome | 18264 | ..................... | 18284 | 100 |
AY394991.1 | SARS coronavirus HZS2-Fc, complete genome | 18264 | ..................... | 18284 | 100 |
AY394992.1 | SARS coronavirus HZS2-C, complete genome | 18264 | ..................... | 18284 | 100 |
AY394993.1 | SARS coronavirus HGZ8L2, complete genome | 18264 | ..................... | 18284 | 100 |
AY394994.1 | SARS coronavirus HSZ-Bc, complete genome | 18264 | ..................... | 18284 | 100 |
AY394995.1 | SARS coronavirus HSZ-Cc, complete genome | 18264 | ..................... | 18284 | 100 |
AY394996.1 | SARS coronavirus ZS-B, complete genome | 18264 | ..................... | 18284 | 100 |
AY394997.1 | SARS coronavirus ZS-A, complete genome | 18264 | ..................... | 18284 | 100 |
AY394998.1 | SARS coronavirus LC1, complete genome | 18264 | ..................... | 18284 | 100 |
AY394999.1 | SARS coronavirus LC2, complete genome | 18264 | ..................... | 18284 | 100 |
AY395000.1 | SARS coronavirus LC3, complete genome | 18264 | ..................... | 18284 | 100 |
AY395001.1 | SARS coronavirus LC4, complete genome | 18264 | ..................... | 18284 | 100 |
AY395002.1 | SARS coronavirus LC5, complete genome | 18264 | ..................... | 18284 | 100 |
AY395003.1 | SARS coronavirus ZS-C, complete genome | 18228 | ..................... | 18248 | 100 |
AY395004.1 | SARS coronavirus HZS2-Bb, partial genome | 18232 | ..................... | 18252 | 100 |
AY313906.1 | SARS coronavirus GD69, complete genome | 18280 | ..................... | 18300 | 100 |
AY350750.1 | SARS coronavirus PUMC01, complete genome | 18266 | ..................... | 18286 | 100 |
AY357075.1 | SARS coronavirus PUMC02, complete genome | 18265 | ..................... | 18285 | 100 |
AY357076.1 | SARS coronavirus PUMC03, complete genome | 18265 | ..................... | 18285 | 100 |
AY282752.2 | SARS coronavirus CUHK-Su10, complete genome | 18264 | ..................... | 18284 | 100 |
AY461660.1 | SARS coronavirus SoD, complete genome | 18264 | ..................... | 18284 | 100 |
AY485277.1 | SARS coronavirus Sino1-11, complete genome | 18279 | ..................... | 18299 | 100 |
AY485278.1 | SARS coronavirus Sino3-11, complete genome | 18279 | ..................... | 18299 | 100 |
AY463059.1 | SARS coronavirus ShanghaiQXC1, complete genome | 18200 | ..................... | 18220 | 100 |
AY463060.1 | SARS coronavirus ShanghaiQXC2, complete genome | 17621 | ..................... | 17641 | 100 |
AY502923.1 | SARS coronavirus TW10, complete genome | 18279 | ..................... | 18299 | 100 |
AY502924.1 | SARS coronavirus TW11, complete genome | 18279 | ..................... | 18299 | 100 |
AY502925.1 | SARS coronavirus TW2, complete genome | 18279 | ..................... | 18299 | 100 |
AY502926.1 | SARS coronavirus TW3, complete genome | 18279 | ..................... | 18299 | 100 |
AY502927.1 | SARS coronavirus TW4, complete genome | 18279 | ..................... | 18299 | 100 |
AY502928.1 | SARS coronavirus TW5, complete genome | 18279 | ..................... | 18299 | 100 |
AY502929.1 | SARS coronavirus TW6, complete genome | 18279 | ..................... | 18299 | 100 |
AY502930.1 | SARS coronavirus TW7, complete genome | 18279 | ..................... | 18299 | 100 |
AY502931.1 | SARS coronavirus TW8, complete genome | 18279 | ..................... | 18299 | 100 |
AY502932.1 | SARS coronavirus TW9, complete genome | 18279 | ..................... | 18299 | 100 |
AY394850.2 | SARS coronavirus WHU, complete genome | 18279 | ..................... | 18299 | 100 |
AY508724.1 | SARS coronavirus NS-1, complete genome | 18263 | ..................... | 18283 | 100 |
AY390556.1 | SARS coronavirus GZ02, complete genome | 18279 | ..................... | 18299 | 100 |
AY515512.1 | SARS coronavirus HC/SZ/61/03, complete genome | 18256 | ..................... | 18276 | 100 |
AY545914.1 | SARS coronavirus isolate HC/SZ/79/03, complete genome | 18256 | ..................... | 18276 | 100 |
AY545915.1 | SARS coronavirus isolate HC/SZ/DM1/03, complete genome | 18247 | ..................... | 18267 | 100 |
AY545916.1 | SARS coronavirus isolate HC/SZ/266/03, complete genome | 18245 | ..................... | 18265 | 100 |
AY545917.1 | SARS coronavirus isolate HC/GZ/81/03, complete genome | 18243 | ..................... | 18263 | 100 |
AY545918.1 | SARS coronavirus isolate HC/GZ/32/03, complete genome | 18245 | ..................... | 18265 | 100 |
AY545919.1 | SARS coronavirus isolate CFB/SZ/94/03, complete genome | 18258 | ..................... | 18278 | 100 |
AY559081.1 | SARS coronavirus Sin842, complete genome | 18267 | ..................... | 18287 | 100 |
AY559082.1 | SARS coronavirus Sin852, complete genome | 18278 | ..................... | 18298 | 100 |
AY559083.1 | SARS coronavirus Sin3408, complete genome | 18313 | ..................... | 18333 | 100 |
AY559084.1 | SARS coronavirus Sin3765V, complete genome | 18263 | ..................... | 18283 | 100 |
AY559085.1 | SARS coronavirus Sin848, complete genome | 18263 | ..................... | 18283 | 100 |
AY559086.1 | SARS coronavirus Sin849, complete genome | 18263 | ..................... | 18283 | 100 |
AY559087.1 | SARS coronavirus Sin3725V, complete genome | 18263 | ..................... | 18283 | 100 |
AY559088.1 | SARS coronavirus SinP1, complete genome | 18264 | ..................... | 18284 | 100 |
AY559089.1 | SARS coronavirus SinP2, complete genome | 18266 | ..................... | 18286 | 100 |
AY559090.1 | SARS coronavirus SinP3, complete genome | 18272 | ..................... | 18292 | 100 |
AY559091.1 | SARS coronavirus SinP4, complete genome | 18263 | ..................... | 18283 | 100 |
AY559092.1 | SARS coronavirus SinP5, complete genome | 18263 | ..................... | 18283 | 100 |
AY559093.1 | SARS coronavirus Sin845, complete genome | 18263 | ..................... | 18283 | 100 |
AY559094.1 | SARS coronavirus Sin846, complete genome | 18265 | ..................... | 18285 | 100 |
AY559095.1 | SARS coronavirus Sin847, complete genome | 18269 | ..................... | 18289 | 100 |
AY559096.1 | SARS coronavirus Sin850, complete genome | 18271 | ..................... | 18291 | 100 |
AY559097.1 | SARS coronavirus Sin3408L, complete genome | 18264 | ..................... | 18284 | 100 |
AY568539.1 | SARS coronavirus GZ0401, complete genome | 18229 | ..................... | 18249 | 100 |
AY595412.1 | SARS coronavirus LLJ-2004, complete genome | 18257 | ..................... | 18277 | 100 |
AY654624.1 | SARS coronavirus TJF, complete genome | 18278 | ..................... | 18298 | 100 |
AY572034.1 | SARS coronavirus civet007, complete genome | 18253 | ..................... | 18273 | 100 |
AY572035.1 | SARS coronavirus civet010, complete genome | 18231 | ..................... | 18251 | 100 |
AY572038.1 | SARS coronavirus civet020, complete genome | 18208 | ..................... | 18228 | 100 |
AY714217.1 | SARS Coronavirus CDC#200301157, complete genome | 18279 | ..................... | 18299 | 100 |
AY613947.1 | SARS coronavirus GZ0402, complete genome | 18229 | ..................... | 18249 | 100 |
AY613948.1 | SARS coronavirus PC4-13, complete genome | 18229 | ..................... | 18249 | 100 |
AY613949.1 | SARS coronavirus PC4-136, complete genome | 18229 | ..................... | 18249 | 100 |